![]() ![]() Thanks #5972 11a300791 - Lite: Support opening the entrypoint HTML page directly in browser via the file: protocol. ![]() Thanks #5956 f769876e0 - Apply formatter (and small refactoring) to the Lite-related frontend code. #5953 921334526 - Lite: Support the custom HTML element syntax.#5983 a32aabaf5 - Lite: Show initialization progress messages.shared/Audio instead of the native for Wasm support. Thanks #6004 ec26b71df - Update static/AudioPlayerto use. #6005 e0ed0642a - Lite: Error handling after initialization.#6020 77e7843f7 - Adds Gradio/lite Guide and Playground to the website.You should then be able to run the code provided above. GzippedĪrchives of the data from each screen can be downloaded from theįollowing links: Screen 1 (shRNA-seq) ,Īfter downloading, uncompress and save these files to your current working directory. This case study looks at data from 6 different screens. If (!requireNamespace("BiocManager", quietly = TRUE))įor information on our Galaxy tool see here. Type the following commands at the R command prompt to install these packages: You also need to install the edgeR (version 3.32.0 or later)īioconductor packages (available release 3.12). You must have R (version 4.0.3 or later) installed on your computer to run this case study. The R code used in this case study Software Note I: The processAmplicons function referred to in version 2 of our paper replaces the processHairpinReads function from version 1. Please cite this article if you make use of the pipeline we describe in your research. (2014) edgeR: a versatile tool for the analysis of shRNA-seq and CRISPR-Cas9 genetic screens, F1000Research,ģ:95. This webpage provides code and data that demonstrates how to use the edgeR package to perform a differential representation analysis of shRNA-seq and sgRNA-seq screen data, as described inĭai et al. ShRNA-seq and CRISPR-Cas9 genetic screen analysis using edgeR ![]()
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